[ABCDEFGHIJKLMNOPQRSTUVWXYZabc](abc)
- Classes: Low resolution protein structures
- Folds: Ribosome and ribosomal fragments
- Superfamilies: Ribosome and ribosomal fragments
- Families: Large subunit
- Protein Domains: Prokaryotic (50S subunit)
- Species: Haloarcula marismortui [TaxId: 2238]
PDB Entries
| PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | ||
|---|---|---|---|---|---|---|---|
| Amino Acid sequence | SCOPe Family Level | CATH Homology Level | |||||
| 1c04 | [ABCD](ab) | [A4](ab) | [A4](ab) | 5 | MSE:SELENOMETHIONINE | ||
| 1w2b | [ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A28B](ab) | [A28B](ab) | 3.5 | CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION | ||
| 2qa4 | [ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A13BCDEFGHIJKLMNOPQ](ab) | [A13BCDEFGHIJKLMNOPQ](ab) | 3 | CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | ||
| 2qex | [ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A13BCDEFGHIJKLMNOPQ](ab) | [A13BCDEFGHIJKLMNOPQ](ab) | 2.9 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION NEG:NEGAMYCIN OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | ||
| 3cc2 | [ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A16BCDEFGHIJKLMN](ab) | [A16BCDEFGHIJKLMN](ab) | 2.4 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | ||
| 3cc4 | [ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A14BCDEFGHIJKLMNOP](ab) | [A14BCDEFGHIJKLMNOP](ab) | 2.7 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE ANM:ANISOMYCIN CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | ||
| 3cc7 |  |
[ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A14BCDEFGHIJKLMNOP](ab) | [A14BCDEFGHIJKLMNOP](ab) | 2.7 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | |
| 3cce | |
[ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A14BCDEFGHIJKLMNOP](ab) | [A14BCDEFGHIJKLMNOP](ab) | 2.75 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | |
| 3ccj | |
[ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A14BCDEFGHIJKLMNOP](ab) | [A14BCDEFGHIJKLMNOP](ab) | 3.3 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | |
| 3ccl | |
[ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A14BCDEFGHIJKLMNOP](ab) | [A14BCDEFGHIJKLMNOP](ab) | 2.9 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | |
| 3ccm | |
[ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A14BCDEFGHIJKLMNOP](ab) | [A14BCDEFGHIJKLMNOP](ab) | 2.55 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | |
| 3ccq | |
[ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A14BCDEFGHIJKLMNOP](ab) | [A14BCDEFGHIJKLMNOP](ab) | 2.9 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | |
| 3ccr | |
[ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A14BCDEFGHIJKLMNOP](ab) | [A14BCDEFGHIJKLMNOP](ab) | 3 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | |
| 3ccs | |
[ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A14BCDEFGHIJKLMNOP](ab) | [A14BCDEFGHIJKLMNOP](ab) | 2.95 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | |
| 3ccu | |
[ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A14BCDEFGHIJKLMNOP](ab) | [A14BCDEFGHIJKLMNOP](ab) | 2.8 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | |
| 3ccv | |
[ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A14BCDEFGHIJKLMNOP](ab) | [A14BCDEFGHIJKLMNOP](ab) | 2.9 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | |
| 3cd6 | |
[ABCDEFGHIJKLMNOPQRSTUVWXYZabc](abc) | [A14BCDEFGHIJKLMNOP](abc) | [A14BCDEFGHIJKLMNOP](abc) | 2.75 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PPU:PUROMYCIN-5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | |
| 3cma | [ABCDEFGHIJKLMNOPQRSTUVWXYZabc](abcd) | [A14BCDEFGHIJKLMNOP](abcd) | [A14BCDEFGHIJKLMNOP](abcd) | 2.8 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE 8AN:3___sq___-AMINO-3___sq___-DEOXYADENOSINE 5___sq___-(DIHYDROGEN PHOSPHATE) ACA:6-AMINOHEXANOIC ACID CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PHE:PHENYLALANINE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | ||
| 3cme | [ABCDEFGHIJKLMNOPQRSTUVWXYZabc](abcd) | [A14BCDEFGHIJKLMNOP](abcd) | [A14BCDEFGHIJKLMNOP](abcd) | 2.95 | 1MA:6-HYDRO-1-METHYLADENOSINE-5___sq___-MONOPHOSPHATE 8AN:3___sq___-AMINO-3___sq___-DEOXYADENOSINE 5___sq___-(DIHYDROGEN PHOSPHATE) ACA:6-AMINOHEXANOIC ACID CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PHE:PHENYLALANINE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE SR:STRONTIUM ION UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | ||
| 3cpw | |
[ABCDEFGHIJKLMNOPQRSTUVWXYZab](abc) | [A14BCDEFGHIJKLMNO](abc) | [A14BCDEFGHIJKLMNO](abc) | 2.7 | ACE:ACETYL GROUP CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION SR:STRONTIUM ION ZLD:N-{[(5S)-3-(3-FLUORO-4-MORPHOLIN-4-YLPHENYL)-2-OXO-1,3-OXAZOLIDIN-5-YL]METHYL}ACETAMIDE | |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
